OMIM Search Help

1.1 Basic Search
1.2 +/- Operators
1.3 Phrase Search
1.4 Wildcard Search
1.5 Fielded Search
1.6 Boolean Operators
1.7 Search Grouping
1.8 Proximity Search
1.9 Term Weight Boosting Search
2.1 OMIM Search Overview
2.2 OMIM Example Searches
2.3 OMIM Search Fields
2.4 Clinical Synopsis Search Fields
2.5 Gene Map Search Fields

1.1 Basic Search

For basic searches, simply enter the terms in the search box and click the 'Search' button:

duchenne muscular dystrophy

The search engine will search for them in any order, ranking the entries containing all the terms higher than entries containing some of the terms.

Searches are case-insensitive, so a search for 'duchenne', 'Duchenne', or 'DUCHENNE' will return the same entries.


1.2 +/- Operators

Adding a '+' (plus) operator before specific terms will ensure that these appear in the entries returned:

+duchenne +muscular dystrophy

The returned entries will contain the terms 'duchenne' and 'muscular', but may or may not contain the term 'dystrophy'.

Conversely, you can affix a '-' (minus) operator to a term if you want to exclude entries that contain it:

+muscular +dystrophy -duchenne

The returned entries will contain the terms 'muscular' and 'dystrophy', but will not contain the term 'duchenne'.


1.3 Phrase Search

You can search for phrases by adding quotation marks at both ends of the phrase:

"duchenne muscular dystrophy"

Only entries containing the phrase "duchenne muscular dystrophy" will be returned.

You can also combine the '-' operator described above with phrase searches, so the search:

"muscular dystrophy" -"duchenne gene"

will return entries that contain the phrase "muscular dystrophy" but do not contain the phrase "duchenne gene".


1.4 Wildcard Search

Two wildcard operators are supported: the '?' (question mark), which is used for single-character wildcard searches, and '*' (star), which is used for multiple-character wildcard searches. For example:

dystroph*

will return entries that contain 'dystrophia', 'dystrophin', 'dystrophic', 'dystrophy', etc...

And:

dystrophi?

will return entries that contain 'dystrophia', 'dystrophin', 'dystrophic', etc., but will not return 'dystrophins'.

However:

dystroph??

will return entries that contain 'dystrophia', 'dystrophin', 'dystrophic', etc., but will not return 'dystrophy'.

You can also insert the wildcard within a term, for example:

dystro*ia

or:

dystro??i?

Finally you can use leading wildcards, for example to search for hypocortisolism/hypercortisolism:

*cortisolism

or:

hy*cortisolism

This will also help for terms which can be spelt in different ways, for example to search for 3-methylglutaric acid:

*glutar*


1.5 Fielded Search

You can search on specific fields within an entry. For example, to search only within the 'title' field you would use:

title:duchenne

Note that there cannot be any spaces between the field name, the colon, and the term.

To do a fielded search for the terms 'duchenne', 'muscular' and 'dystrophy' in the 'title' field, you could use:

title:duchenne title:muscular title:dystrophy

A more elegant way to express this is to 'group' the search using parentheses as follows:

title:(duchenne muscular dystrophy)

Note that there cannot be any spaces between the field name, the colon, and the left parenthesis.

As mentioned in the 'Basic Search' section above, this will search for the terms in any order. You can use the '+' operator to ensure that the entries contain all the terms as follows:

title:(+duchenne +muscular +dystrophy)

And to search for a phrase within a field, you would use:

title:"duchenne muscular dystrophy"

Note that the parentheses have been replaced by quotation marks and that there are no spaces between the field name, the colon, and the left quotation mark.

OMIM has many fields you can search on. These are listed further down in this document along with examples for common and complex searches.


1.6 Boolean Operators

Like most search engines, the 'AND', 'OR' and 'NOT' boolean operators are supported. For example:

duchenne AND muscular AND dystrophy

which could also be written as:

+duchenne +muscular +dystrophy

Or this search:

muscular AND dystrophy NOT duchenne

which could also be written as:

+muscular +dystrophy -duchenne

Both ways work equally well, it is a matter of personal preference.

Note that boolean operators must be in UPPER case.


1.7 Search Grouping

It is usually a good idea to use search grouping to indicate precedence in a search containing boolean operators. For example, the search:

muscular AND dystrophy OR duchenne AND gene

could be ambiguous.

Using search groupings (using the left and right parentheses) would make the search clearer:

(muscular AND dystrophy) OR (duchenne AND gene)

Searches can be grouped to create arbitrarily complex searches:

( (muscular AND dystrophy) OR (duchenne AND gene) ) NOT (becker OR Emery-Dreifuss)


1.8 Proximity Search

A proximity search can be used to limit the distance in words between two terms. This is done by using the '~' (tilde) operator:

"muscular dystrophy"~10

This will return entries where the terms 'muscular' and 'dystrophy' are less than 10 words apart.

Note that this distance is direction-independent, so 'muscular ... dystrophy' is the same as 'dystrophy ... muscular'.


1.9 Term Weight Boosting Search

Individual terms in a search can be boosted with respect to each other. Terms in a search have a weight of 1 by default; however, the '^' (caret) operator can be used to boost the weight of individual terms. For example:

muscular dystrophy^10

will boost the weight of the term 'dystrophy' by a factor of 10.


2.1 OMIM Search Overview

Searches that don't specify a field are called 'default' searches, and the table below indicates which fields are included in a 'default' search. For entries this includes all fields except for the external data fields. This search will search all fields (except the external data fields):

duchenne muscular dystrophy

Some search fields are grouped into a 'meta' search field. One of these is the 'title' search field. Searching on this field will search the preferred, alternative, and included title fields simultaneously:

title:(duchenne muscular dystrophy)

To restrict the search to only one of these fields, use 'ti_preferred', 'ti_alternative', or 'ti_included' before your search term:

ti_preferred:(duchenne muscular dystrophy)

There are a number of meta search fields, and these generally mirror the sections that make up a MIM entry.

Some search fields support a restricted vocabulary. One such field is 'status' that contains the status of an entry, whether an entry is 'live', 'moved', or 'removed'. This search would only return entries that are live:

status:live

Whereas this search would return entries that have been moved:

status:moved

Some search fields are booleans containing either 'true' or 'false' as values. One such field is 'av_exists' which is set to 'true' for entries that contain allelic variants and 'false' for entries that don't. This search would return only entries that contain allelic variants:

av_exists:true

Conversely this search would return only entries that don't contain allelic variants:

av_exists:false


2.2 OMIM Example Searches

Here are some example searches with an explanation of how they are interpreted:

blindness hypertelorism

Is interpreted as:

blindness OR hypertelorism

Using '+' to require terms:

+blindness +hypertelorism

Is interpreted as:

blindness AND hypertelorism

Using '-' to negate terms:

+blindness -hypertelorism

Is interpreted as:

blindness NOT hypertelorism

Using quotes for a phrase search:

"short stature"

A wide number of external identifiers are indexed in OMIM, this section described some of those.

References in OMIM are matched against PubMed and the PubMed IDs can be searched for:

ref_pubmed_id:3294410

You can search for the Approved Gene Symbol:

approved_gene_symbol:DMD

Or you can search for the NCBI Gene ID:

gene_id:1756

Clinical Disease ID searches:

clinical_disease_id:2662

Wormbase IDs are also searchable:

wormbase_id:WBGene00140105

The list of external IDs is extensive and is located at the end of the OMIM Search Fields list, in the External Data section.

Restricting searches to specific prefixes is done as follows:

duchenne AND prefix:*

duchenne AND prefix:+

duchenne AND prefix:#

duchenne AND prefix:%

duchenne AND prefix:none


2.3 OMIM Search Fields

Note that the external data (located at the bottom of the table) is not included in an unfielded search, so if you wanted to search for an HGNC Approved Gene Symbol, you would need to search on the 'approved_gene_symbol' field specifically:

approved_gene_symbol:MZT1

Field Name Field Description Meta Fields Comments
number mim number default key field
prefix prefix default
title title
ti_preferred preferred title title, default
ti_alternative alternative title title, default
ti_included included title title, default
status status (live/moved/removed)
moved_to mim number moved to
text text
tx_animal_model animal model text, default
tx_biochemical_features biochemical features text, default
tx_clinical_features clinical features text, default
tx_clinical_management clinical management text, default
tx_cloning cloning text, default
tx_cytogenetics cytogenetics text, default
tx_description description text, default
tx_diagnosis diagnosis text, default
tx_evolution evolution text, default
tx_gene_family gene family text, default
tx_gene_function gene function text, default
tx_gene_structure gene structure text, default
tx_gene_therapy gene therapy text, default
tx_genetic_variability genetic variability text, default
tx_genotype genotype text, default
tx_genotype_phenotype_correlations genotype phenotype correlations text, default
tx_heterogeneity heterogeneity text, default
tx_history history text, default
tx_inheritance inheritance text, default
tx_mapping mapping text, default
tx_molecular_genetics molecular genetics text, default
tx_nomenclature nomenclature text, default
tx_other_features other features text, default
tx_pathogenesis pathogenesis text, default
tx_phenotype phenotype text, default
tx_population_genetics population genetics text, default
tx_text text text, default
av allelic variant
av_exists flags the presence of allelic variants boolean
av_number number in the format #### av, default
av_name name av, default
av_alternative_names included names av, default
av_mutations mutations av, default
av_text text av, default
av_db_snp db SNP av, default
cs_exists flags the presence of a clinical synopsis boolean
cs_* includes default the clinical synopsis fields that start with 'cs' - see below cs, default
see_also see also default
ref reference
ref_author author ref, default
ref_title title ref, default
ref_source source ref, default
ref_pubmed_id Pubmed ID ref, default
ref_article_url article url ref, default
gm_exists flags the presence in the gene map boolean
gm_gene_exists flags the presence of a gene in the gene map boolean
gm_gene_phenotype_exists flags the presence of a gene with a phenotype in the gene map boolean
gm_phenotype_exists flags the presence of a phenotype in the gene map boolean
phenotype_exists flags the presence of a gene with a phenotype or phenotype in the gene map boolean
chromosome chromosome 1-22, X, Y, M, U
chromosome_number chromosome number 1-22, 23, 24, 25, 0
chromosome_group chromosome group A - Autosomal, S - XY, M - Mitochondria, U - Unset
contributors contributors (includes creator) default
creator creator default
date_created date created date
date_updated date updated date
External Data
approved_gene_symbol approved gene symbol
approved_gene_symbol_exists flags the presence of an approved gene symbol boolean
gene_id NCBI gene ID
gene_id_exists flags the presence of an NCBI gene ID boolean
ncbi_reference_sequence NCBI reference sequence
ncbi_reference_sequence_exists flags the presence of an NCBI reference sequence boolean
genbank_nucleotide_sequence Genbank nucleotide sequence
genbank_nucleotide_sequence_exists flags the presence of a Genbank nucleotide sequence boolean
protein_sequence protein sequence
protein_sequence_exists flags the presence of a protein sequence boolean
uni_gene Uni Gene
uni_gene_exists flags the presence of a Uni Gene boolean
ensembl_id Ensembl ID
ensembl_id_exists flags the presence of an Ensembl ID boolean
swiss_prot_id Swiss Prot ID
swiss_prot_id_exists flags the presence of a Swiss Prot ID boolean
locus_specific_database_name locus specific database name (currently excluded)
locus_specific_database_url locus specific database url (currently excluded)
locus_specific_database_exists flags the presence of a locus specific database boolean
mgi_id MGI ID
mgi_id_exists flags the presence of an MGI ID boolean
mgi_human_disease MGI human disease boolean
wormbase_id WormBase ID
wormbase_id_exists flags the presence of a WormBase ID boolean
clinical_disease_id gene tests clinical disease ID
clinical_disease_id_exists flags the presence of a gene tests clinical disease ID boolean
gene_review_short_name Gene Review short name
clinical_disease_name clinical disease name
gene_review_exists flags the presence of a Gene Review boolean
possum_id Possum ID (currently excluded)
possum_syndrome_name Possum syndrome name (currently excluded)
possum_id_exists flags the presence of a Possum ID boolean
flybase_id FlyBase ID
flybase_id_exists flags the presence of a FlyBase ID boolean
zfin_id ZFIN ID
zfin_id_exists flags the presence of a ZFIN ID boolean
newborn_screening_url Newborn Screening url
newborn_screening_url_exists flags the presence of a Newborn Screening url boolean
hprd_id HPRD ID
hprd_id_exists flags the presence of a HPRD ID boolean
coriell_id Coriell ID
coriell_disease_name Coriell disease name
coriell_id_exists flags the presence of a Coriell ID boolean
derm_atlas Derm Atlas boolean
orphanet_id Orphanet ID
orphanet_disease_name Orphanet disease name
orphanet_id_exists flags the presence of an Orphanet ID boolean
ref_seq_accession_id RefSeq accession ID
ref_seq_accession_id_exists flags the presence of a RefSeq accession ID boolean
ordr_id ORDR ID
ordr_disease_name ORDR disease name
ordr_id_exists flags the presence of an ORDR ID boolean
decipher_name DECIPHER name (currently excluded)
decipher_url DECIPHER url (currently excluded)
decipher_exists flags the presence of a DECIPHER link boolean
ghr_type Genetics Home Reference type gene|condition
ghr_title Genetics Home Reference title
ghr_id Genetics Home Reference ID
ghr_id_exists flags the presence of a Genetics Home Reference ID boolean
omia_id OMIA ID
omia_group OMIA Group
omia_id_exists flags the presence of an OMIA ID boolean
snomedct_id SNOMEDCT ID
snomedct_id_exists flags the presence of a SNOMEDCT ID boolean
icd10cm_id ICD10CM ID
icd10cm_id_exists flags the presence of a ICD10CM ID boolean
icd9cm_id ICD9CM ID
icd9cm_id_exists flags the presence of a ICD9CM ID boolean
umls_id UMLS ID
umls_id_exists flags the presence of a UMLS ID boolean

2.4 Clinical Synopsis Search Fields
Field Name Field Description Meta Fields Comments
number mim number default key field
cs clinical synopsis
cs_inheritance inheritance cs, default
cs_inheritance_exists flags the presence of inheritance boolean
cs_growth growth
cs_growth_exists flags the presence of growth (and subheadings) boolean
cs_growth_height growth/height cs_growth, cs, default
cs_growth_height_exists flags the presence of growth/height boolean
cs_growth_weight growth/weight cs_growth, cs, default
cs_growth_weight_exists flags the presence of growth/weight boolean
cs_growth_other growth/other cs_growth, cs, default
cs_growth_other_exists flags the presence of growth/other boolean
cs_head_and_neck head and neck
cs_head_and_neck_exists flags the presence of head and neck (and subheadings) boolean
cs_head_and_neck_head head and neck/head cs_head_and_neck, cs, default
cs_head_and_neck_head_exists flags the presence of head and neck/head boolean
cs_head_and_neck_face head and neck/face cs_head_and_neck, cs, default
cs_head_and_neck_face_exists flags the presence of head and neck/face boolean
cs_head_and_neck_ears head and neck/ears cs_head_and_neck, cs, default
cs_head_and_neck_ears_exists flags the presence of head and neck/ears boolean
cs_head_and_neck_eyes head and neck/eyes cs_head_and_neck, cs, default
cs_head_and_neck_eyes_exists flags the presence of head and neck/eyes boolean
cs_head_and_neck_nose head and neck/nose cs_head_and_neck, cs, default
cs_head_and_neck_nose_exists flags the presence of head and neck/nose boolean
cs_head_and_neck_mouth head and neck/mouth cs_head_and_neck, cs, default
cs_head_and_neck_mouth_exists flags the presence of head and neck/mouth boolean
cs_head_and_neck_teeth head and neck/teeth cs_head_and_neck, cs, default
cs_head_and_neck_teeth_exists flags the presence of head and neck/teeth boolean
cs_head_and_neck_neck head and neck/neck cs_head_and_neck, cs, default
cs_head_and_neck_neck_exists flags the presence of head and neck/neck boolean
cs_cardiovascular cardiovascular
cs_cardiovascular_exists flags the presence of cardiovascular (and subheadings) boolean
cs_cardiovascular_heart cardiovascular/heart cs_cardiovascular, cs, default
cs_cardiovascular_heart_exists flags the presence of cardiovascular/heart boolean
cs_cardiovascular_vascular cardiovascular/vascular cs_cardiovascular, cs, default
cs_cardiovascular_vascular_exists flags the presence of cardiovascular/vascular boolean
cs_respiratory respiratory
cs_respiratory_exists flags the presence of respiratory (and subheadings) boolean
cs_respiratory_nasopharynx respiratory/nasopharynx cs_respiratory, cs, default
cs_respiratory_nasopharynx_exists flags the presence of respiratory/nasopharynx boolean
cs_respiratory_larynx respiratory/larynx cs_respiratory, cs, default
cs_respiratory_larynx_exists flags the presence of respiratory/larynx boolean
cs_respiratory_airways respiratory/airways cs_respiratory, cs, default
cs_respiratory_airways_exists flags the presence of respiratory/airways boolean
cs_respiratory_lung respiratory/lung cs_respiratory, cs, default
cs_respiratory_lung_exists flags the presence of respiratory/lung boolean
cs_chest chest
cs_chest_exists flags the presence of chest (and subheadings) boolean
cs_chest_external_features chest/external_features cs_chest, cs, default
cs_chest_external_features_exists flags the presence of chest/external features boolean
cs_chest_ribs_sternum_clavicle_and_scapulae chest/ribs sternum clavicle and_ scapulae cs_chest, cs, default
cs_chest_ribs_sternum_clavicle_and_scapulae_exists flags the presence of chest/ribs sternum clavicle and scapulae boolean
cs_chest_breasts chest/breasts cs_chest, cs, default
cs_chest_breasts_exists flags the presence of chest/breasts boolean
cs_chest_diaphragm chest/diaphragm cs_chest, cs, default
cs_chest_diaphragm_exists flags the presence of chest/diaphragm boolean
cs_abdomen abdomen
cs_abdomen_exists flags the presence of abdomen (and subheadings) boolean
cs_abdomen_external_features abdomen/external_features cs_abdomen, cs, default
cs_abdomen_external_features_exists flags the presence of abdomen/external features boolean
cs_abdomen_liver abdomen/liver cs_abdomen, cs, default
cs_abdomen_liver_exists flags the presence of abdomen/liver boolean
cs_abdomen_pancreas abdomen/pancreas cs_abdomen, cs, default
cs_abdomen_pancreas_exists flags the presence of abdomen/pancreas boolean
cs_abdomen_biliary_tract abdomen/biliary tract cs_abdomen, cs, default
cs_abdomen_biliary_tract_exists flags the presence of abdomen/biliary tract boolean
cs_abdomen_spleen abdomen/spleen cs_abdomen, cs, default
cs_abdomen_spleen_exists flags the presence of abdomen/spleen boolean
cs_abdomen_gastrointestinal abdomen/gastrointestinal cs_abdomen, cs, default
cs_abdomen_gastrointestinal_exists flags the presence of abdomen/gastrointestinal boolean
cs_genitourinary genitourinary
cs_genitourinary_exists flags the presence of genitourinary (and subheadings) boolean
cs_genitourinary_external_genitalia_male genitourinary/external genitalia male cs_genitourinary, cs, default
cs_genitourinary_external_genitalia_male_exists flags the presence of genitourinary/external genitalia male boolean
cs_genitourinary_external_genitalia_female genitourinary/external genitalia female cs_genitourinary, cs, default
cs_genitourinary_external_genitalia_female_exists flags the presence of genitourinary/external genitalia female boolean
cs_genitourinary_internal_genitalia_male genitourinary/internal genitalia male cs_genitourinary, cs, default
cs_genitourinary_internal_genitalia_male_exists flags the presence of genitourinary/internal genitalia male boolean
cs_genitourinary_internal_genitalia_female genitourinary/internal genitalia female cs_genitourinary, cs, default
cs_genitourinary_internal_genitalia_female_exists flags the presence of genitourinary/internal genitalia female boolean
cs_genitourinary_kidneys genitourinary/kidneys cs_genitourinary, cs, default
cs_genitourinary_kidneys_exists flags the presence of genitourinary/kidneys boolean
cs_genitourinary_ureters genitourinary/ureters cs_genitourinary, cs, default
cs_genitourinary_ureters_exists flags the presence of genitourinary/ureters boolean
cs_genitourinary_bladder genitourinary/bladder cs_genitourinary, cs, default
cs_genitourinary_bladder_exists flags the presence of genitourinary/bladder boolean
cs_skeletal skeletal
cs_skeletal_exists flags the presence of skeletal (and subheadings) boolean
cs_skeletal_skull skeletal/skull cs_skeletal, cs, default
cs_skeletal_skull_exists flags the presence of skeletal/skull boolean
cs_skeletal_spine skeletal/spine cs_skeletal, cs, default
cs_skeletal_spine_exists flags the presence of skeletal/spine boolean
cs_skeletal_pelvis skeletal/pelvis cs_skeletal, cs, default
cs_skeletal_pelvis_exists flags the presence of skeletal/pelvis boolean
cs_skeletal_limbs skeletal/limbs cs_skeletal, cs, default
cs_skeletal_limbs_exists flags the presence of skeletal/limbs boolean
cs_skeletal_hands skeletal/hands cs_skeletal, cs, default
cs_skeletal_hands_exists flags the presence of skeletal/hands boolean
cs_skeletal_feet skeletal/feet cs_skeletal, cs, default
cs_skeletal_feet_exists flags the presence of skeletal/feet boolean
cs_skin_nails_hair skin_nails_hair
cs_skin_nails_hair_exists flags the presence of skin nails hair (and subheadings) boolean
cs_skin_nails_hair_skin skin nails hair/skin cs_skin_nails_hair, cs, default
cs_skin_nails_hair_skin_exists flags the presence of skin nails hair/skin boolean
cs_skin_nails_hair_skin_histology skin nails hair/skin histology cs_skin_nails_hair, cs, default
cs_skin_nails_hair_skin_histology_exists flags the presence of skin nails hair/skin histology boolean
cs_skin_nails_hair_skin_electron_microscopy skin nails hair/skin electron microscopy cs_skin_nails_hair, cs, default
cs_skin_nails_hair_skin_electron_microscopy_exists flags the presence of skin nails hair/skin electron microscopy boolean
cs_skin_nails_hair_nails skin nails hair/nails cs_skin_nails_hair, cs, default
cs_skin_nails_hair_nails_exists flags the presence of skin nails hair/nails boolean
cs_skin_nails_hair_hair skin nails hair/hair cs_skin_nails_hair, cs, default
cs_skin_nails_hair_hair_exists flags the presence of skin nails hair/hair boolean
cs_muscle_soft_tissue muscle_soft_tissue
cs_muscle_soft_tissue_exists flags the presence of muscle_soft_tissue boolean
cs_neurologic neurologic
cs_neurologic_exists flags the presence of neurologic (and subheadings) boolean
cs_neurologic_central_nervous_system neurologic/central nervous system cs_neurologic, cs, default
cs_neurologic_central_nervous_system_exists flags the presence of neurologic/central nervous system boolean
cs_neurologic_peripheral_nervous_system neurologic/peripheral nervous system cs_neurologic, cs, default
cs_neurologic_peripheral_nervous_system_exists flags the presence of neurologic/peripheral nervous system boolean
cs_neurologic_behavioral_psychiatric_manifestations neurologic/behavioral psychiatric manifestations cs_neurologic, cs, default
cs_neurologic_behavioral_psychiatric_manifestations_exists flags the presence of neurologic/behavioral psychiatric manifestations boolean
cs_voice voice cs, default
cs_voice_exists flags the presence of voice boolean
cs_metabolic_features metabolic features cs, default
cs_metabolic_features_exists flags the presence of metabolic features boolean
cs_endocrine_features endocrine features cs, default
cs_endocrine_features_exists flags the presence of endocrine features boolean
cs_hematology hematology cs, default
cs_hematology_exists flags the presence of hematology boolean
cs_immunology immunology cs, default
cs_immunology_exists flags the presence of immunology boolean
cs_neoplasia neoplasia cs, default
cs_neoplasia_exists flags the presence of neoplasia boolean
cs_prenatal_manifestations prenatal_manifestations
cs_prenatal_manifestations_exists flags the presence of prenatal manifestations (and subheadings) boolean
cs_prenatal_manifestations_movement prenatal manifestations/movement cs_prenatal_manifestations, cs, default
cs_prenatal_manifestations_movement_exists flags the presence of prenatal manifestations/movement boolean
cs_prenatal_manifestations_amniotic_fluid prenatal manifestations/amniotic_fluid cs_prenatal_manifestations, cs, default
cs_prenatal_manifestations_amniotic_fluid_exists flags the presence of prenatal manifestations/amniotic_fluid boolean
cs_prenatal_manifestations_placenta_and_umbilical_cord prenatal manifestations/placenta and umbilical cord cs_prenatal_manifestations, cs, default
cs_prenatal_manifestations_placenta_and_umbilical_cord_exists flags the presence of prenatal manifestations/placenta and umbilical_cord boolean
cs_prenatal_manifestations_maternal prenatal manifestations/maternal cs_prenatal_manifestations, cs, default
cs_prenatal_manifestations_maternal_exists flags the presence of prenatal manifestations/maternal boolean
cs_prenatal_manifestations_deliver prenatal manifestations/deliver cs_prenatal_manifestations, cs, default
cs_prenatal_manifestations_deliver_exists flags the presence of prenatal manifestations/deliver boolean
cs_laboratory_abnormalities laboratory abnormalities cs, default
cs_laboratory_abnormalities_exists flags the presence of laboratory abnormalities boolean
cs_miscellaneous miscellaneous cs, default
cs_miscellaneous_exists flags the presence of miscellaneous boolean
cs_molecular_basis molecular basis cs, default
cs_molecular_basis_exists flags the presence of molecular basis boolean
cs_old_format_exists flags the presence of old format boolean
cs_contributors contributors (includes creator) default
cs_creator creator default
date_created date created date
date_updated date updated date

2.5 Gene Map Search Fields
Field Name Field Description Meta Fields Comments
sequence_id sequence ID key field
chromosome chromosome 1-22, X, Y
chromosome_number chromosome number 1-22, 23, 24
chromosome_group chromosome group A - Autosomal, S - XY
chromosome_location_start start chromosome location
chromosome_location_end end chromosome location default
transcript transcript default
cyto_location cyto location
computed_cyto_location computed cyto location
number mim number default
gene_symbol gene symbol default
gene_name gene name default
mapping_method mapping method
confidence confidence
references references default
comments comments default
phenotype_exists phenotype exists boolean
phenotype phenotype text default
phenotype_number phenotype mim number default
phenotypic_series_number phenotypic series mim number default
phenotype_mapping_key phenotype mapping key 1, 2, 3, 4
mouse_gene_symbol mouse gene symbol
mouse_mgi_id mouse MGI ID